We have extensions that support PhysiCell:
- Heiland et al., xml2jupyter: Mapping parameters between XML and Jupyter widgets, Journal of Open Source Software (2019, in review)
- Preen et al., Towards an evolvable cancer treatment simulator, Biosystems (2019)
- Ozik et al., Learning-accelerated discovery of immune-tumour interactions, Molecular Systems Design and Engineering (2019)
- Letort et al., PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling, Bioinformatics (2019)
- Ozik et al., High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow, BMC Systems Biology (2018)